Evaluate recombination terrain, genetic positions of indicators was plotted up against its real ranks to acquire Marey maps
Intraspecific differences in recombination surface
In addition to GWRR, we analyzed the brand new activities of recombination rates across the chromosomes, hereafter called recombination surface, and you can opposed them for each pairwise mix of linkage charts and you will ranging from Damage and you can Flint swimming pools. We wanted to take to whether or not there are intraspecific distinctions having recombination surface because of the large intraspecific diversity in the maize therefore the reality that people observe an obvious distinction ranging from traces from inside the genetic diversity analyses (get a hold of Even more file dos to have information) and GWRR. Most such as maps shown a rather simple and you will monotonic development (like, CFD01 chromosome one in A lot more document eight). But not, in a number of charts, there have been large places emptiness off polymorphic ple, CFF07 chromosome 1 in Even more file 7), and/or map yielded a few parallel horizontal traces away from ple, CFF01 chromosome step three into the More file 7). Such as for example parallel outlines could well be told me because of the repeated chromosomal places, you are able to problems on B73 installation, and/or low-copy-particular SNP indicators who would discover paralogous sequences. (więcej…)